UROP Research Mentor Project Submission Portal: Submission #540

Submission information
Submission Number: 540
Submission ID: 8971
Submission UUID: aef865c0-394b-4f12-a653-78e37919883f

Created: Mon, 08/21/2023 - 02:51 PM
Completed: Mon, 08/21/2023 - 05:00 PM
Changed: Thu, 10/05/2023 - 09:59 AM

Remote IP address: 107.77.216.200
Submitted by: Anonymous
Language: English

Is draft: No

Research Mentor Information

Susan Rogowski
she/her
Ms.
sr19a@fsu.edu
Graduate Student
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Arts and Sciences
Mathematics
Math.jpg

Additional Research Mentor(s)

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Overall Project Details

Making Predictions Using a Mathematical Model of Bacteria
Math, Statistics, Biology, Bacteria, Coding
No
1
Mathematics, Statistics, Biology, Computer Science, Scientific Computing, Engineering
On FSU Main Campus
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Partially Remote
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Flexible schedule (Combination of business and outside of business. TBD between student and research mentor.)
We will be studying the bacterial gradostat. A gradostat is an interconnected system of devices where bacteria is continuously grown. This tool is commonly used in biology labs to grow, harvest, and maintain a desired cell culture of bacteria. Gradostat systems are also commonly used within biology as a “crude” model for microbial ecological systems where there may be competition between multiple bacteria populations. One of the benefits of the gradostat is that one can model almost exactly what happens in the physical device using a system of mathematical equations. We will study these mathematical equations in detail and work on simulating them through MatLab or Python. We will also apply the statistical method known as Markov Chain Monte Carlo (MCMC) to make predictions about the gradostat system. In particular, we will be interested in estimating and predicting the growth rate of the bacteria.
First, the student will be assigned some articles and textbook chapters to read to gain some necessary background knowledge. After reading, the student should write up a short summary of the reading to share and discuss with me. The student will work with me to develop code in MatLab or Python to simulate our mathematical model. Finally, the student will prepare a poster to present their results. The student may have the opportunity to submit their poster to local and national conferences if they would like.
Recommended Pre-Requisite Courses: Calculus or Pre-Calculus
Recommended (but, definitely not required!) Skills: Some experience with coding on MatLab or Python
As a mentor, my main goal is to create a safe and brave environment where my mentee feels motivated to take risks and make mistakes. Ultimately, I believe to grow as a student and a researcher we must experience failure in order to learn. As a graduate student, I am relatively new to the research mentor space. So, I will be working, growing, and learning alongside my mentee. We will be taking risks and learning together! I hope that we will have a collaborative relationship where we can hold each other accountable to reach our goals.
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UROP Program Elements

Yes
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Yes
Yes
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No
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2023
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